Backing up jailbrake

whats best thing now?
possible sync new jb apps itunes?
have mac mini (lion), on earlier , had itunes open, detecting 4s via wifi. showing cydia app etc on preview screen didnt want without asking first.

if backup, overwrite backup did before ran jb?

 

it's possible iphone before jailbroke.
itunes isn't going jailbreak programs.
find backups tend pile on hard drive.

 

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