Why does Resume open app window that didn't have any opened?

i love resume hate 1 thing. why open application windows if closed before restart or shutdown? running, hidden. after restart it's kinda flood of unnecessary windows example ical, textwrangler, utorrent, mail.app ... well, of them. there solution this?

thank you.

 

even though had them minimized down in dock, os still recognizes them active, running applications, , therefore resumes state in when shut down. assume solution close programs before shut down.

 

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